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New:
Poster presented at the Society for Neuroscience Conference,
November 2005 |
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IMGEM
The
IMGEM project is to make semi-quantitative gene expression image
database and analysis system widely available to the neuroscience
community. Current molecular biological techniques allow us
to visualize semi-quantitative levels of gene expression
in situ. For example, autoradio-graphical image data from
in situ hybridization histochemistry (ISHH) provides
a wealth of information, which if made readily available could
be beneficial for neuroscience researchers.
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Research Plan for 2D
The question to be addressed is how to construct an image database,
capable of efficient storage, retrieval, presentation, manipulation
and analysis of gene expression 2D image data. The gene expression
2D image data consists of ISHH experimental data from coronal
brain sections and sagittal and horizontal data re-sliced from
reconstructed 3D data sets. This project also incorporates counterstaining
images with Nissl-stain, micro-ISHH images, Internet hyperlinks
to PubMed, GenBank and other available information on the network.
A true image format is intended to accurately store an image
for future editing. Tagged image file format (TIFF) format will
be the best format to store the original 2D data of IMGEM.
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News Article:
Mapping Brain Genes in 3D Genomics
& Proteomics April 20, 2004
click here
How
to build a relational information infrastructure for neuroscientists
The
Society for Neuroscience Meeting 2003, New Orleans - Dr. Sugaya
click
here
Poster Presented at the Chicago Chapter Society for Neuroscience
2003 scientific meeting
click
here
Dr. Sugaya's Lab
click
here |
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To view a flash introduction to IMGEM
click
here
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Questions
and Comments Welcomed
Please submit your questions, comments and suggestions at the
feedback forum. We are striving to built a useful site. All
feedback welcomed and considered.
click
here
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Last Updated: March 2006 |
